The A locus is labeled as the A locus because it is dominant over all colors, with some exception (c REW) in the E locus, being co-dominant so the the E genes act on the A genes, but do not mask them. Non extension is not dominant over otter or else you could not get tort otter, you would just get tort ee. They are co dominant, which is how you can have both markings on one rabbit. You cannot mask agouti or tan, if you carry, and inherit it, you display it. Only agouti A can mask otter at. Martin is a chin based otter, so it carries the shaded gene.
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Chocolate chestnut is not a lighter chestnut, it would have chocolate tipping and ear lacing, and the eyes might have a ruby cast. The amount of rufus and tipping an agouti has is independent of it's base color.