So, Monday I set my bunny up in a new hutch (indoor)... It's a 2 story hutch (50" long, 26" wide and each story is 20" tall). I have it set up with the litter box on the ground floor in the rear left corner with her hay cage right above it, her water bottle in the front left corner and her pellet bowl next to that...Upstairs I have a fleece blanket on the floor and in her enclosed area I have her bed. The bed is like a fluffy cotton. So anyway, there's plenty of poop and pee in her litter box, a few, maybe 4-5 poop balls on the ground floor carpet, but then in her bed, she pooped and peed yesterday and then again this morning she pooped in her bed. Her original cage was a 36" standard metal cage with Kaytee clean and cozy bedding covering the whole floor. In there she only pooped and peed in one corner, the rear left corner, when she came out she never pooped on the carpet in the room I let her out in, she always went back in her cage. In her new hutch I figured i'd try litter in her litter box, so I put Kaytee critter litter in it... After her bed was washed, I put it in and she immediately went upstairs and pooped/peed in it, so... I took the bed out, put bedding in the same area her bed was in and she poops/pees in the bedding. She eats her hay downstairs in her litter box and runs upstairs to poop/pee.. Oh well, I guess i'll live with that, lol. We've had Coco for 2 weeks, the first week and a half she would come out of her cage and play and never poop on the carpet in the living room. Since I changed her cage to a much nicer and bigger hutch, she now poops on the living room carpet... I guess I really did screw her up.